Search results

Bowtie2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (465 words) - 14:48, 14 December 2022
Category:Library
[[Category:Software]] Libraries available for use by other software and for development.

87 members (0 subcategories, 0 files) - 04:37, 29 June 2012
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
Mixmogam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 22:42, 8 September 2020
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
Computer Vision
This page describes the collection of Computer Vision software on HiperGator. Computer vision is a crucial field of artificial intelligenc ...ow|tensorflow]] or ngc-tensorflow''': TensorFlow is a free and open-source software library for machine learning and artificial intelligence. '''ngc-tensorFlow

4 KB (563 words) - 20:59, 21 December 2022
ITK-SNAP
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] SNAP is a software application used to segment structures in 3D medical images. It provides se

3 KB (397 words) - 19:23, 12 August 2022
Amphora2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

3 KB (333 words) - 17:35, 10 June 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
Alfred
[[Category:Software]]

3 KB (294 words) - 19:29, 14 November 2022
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
Orthograph
[[Category:Software]][[Category:Biology]]

2 KB (261 words) - 18:00, 19 August 2022
Trvz
[[Category:Software]]

2 KB (273 words) - 14:46, 28 July 2023
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
MafFilter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 17:01, 24 February 2020
Metacrast
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 17:58, 27 May 2022
Installing Personal Python Modules
[[Category:Python]][[Category:Software]] ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt

2 KB (243 words) - 14:51, 10 February 2023
SeCaPr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 21:24, 6 December 2019
ESPRESSO
[[Category:Software]][[Category:Modeling]][[Category:Chemistry]] ...seudopotentials (both norm-conserving and ultrasoft)." It is a open-source software and developed by join efforts of the DEMOCRITOS National Simulation Center(

2 KB (254 words) - 20:22, 8 November 2022
Mg-rast
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (267 words) - 21:21, 6 December 2019
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
BinPacker
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...ur data and could explain all observed splicing events of each locus. This software is free to use, modify, redistribute without any restrictions, except inclu

3 KB (365 words) - 12:53, 15 August 2022
Category:Healthcare
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
SortaDate
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:42, 4 May 2020
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
QUAST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (361 words) - 21:01, 21 August 2022
Biodiverse
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 6 December 2019
Primer3
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (294 words) - 20:26, 12 August 2022
Nanofilt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 13:48, 19 August 2022
DTI-TK
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

3 KB (311 words) - 18:51, 12 August 2022
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
SALSA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (269 words) - 20:11, 24 August 2022
Tecplot 360 EX
[[Category:Software]][[Category:Math]][[Category:Animation]][[Category:Fluid Dynamics]][[Catego

3 KB (337 words) - 14:56, 19 August 2022
Radorgminer
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

3 KB (297 words) - 21:55, 6 July 2022
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
Vim
[[Category:Software]][[Category:Programming]][[Category:Language]]

3 KB (320 words) - 18:56, 21 August 2022
DeepLabCut
[[Category:Software]][[Category:Phylogenetics]]

3 KB (385 words) - 21:20, 6 December 2019
Csvpad
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.trustfm.net/software/utilities/CSVpad.php}}

2 KB (265 words) - 18:31, 1 March 2023
Alphaimpute
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}

3 KB (337 words) - 12:37, 12 August 2022
QT
[[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} 

2 KB (257 words) - 20:57, 21 August 2022
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
Template:Fileabug
...u/ Support System]. The support request tickets can be used for requesting software installation, finding a solution to a particular problem, or just asking a

273 bytes (40 words) - 18:12, 21 June 2017
Rrnaselector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (304 words) - 21:24, 6 December 2019
CRISPRanalyzer
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (294 words) - 14:12, 15 August 2022
BERTopic
[[Category:Software]][[Category:Machine Learning]]

2 KB (283 words) - 14:00, 27 May 2022
ToFU2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] software. The isoform sequencing (Iso-Seq) application generates full-length

3 KB (398 words) - 16:38, 22 August 2022
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
TreeShrink
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:29, 6 December 2019
Cgmaptools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 21:01, 6 December 2019
TotalView
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (335 words) - 12:02, 26 August 2022
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
MUMmer
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (393 words) - 13:39, 19 August 2022
Bxh xcede tools
[[Category:Software]][[Category:Biology]]

2 KB (291 words) - 18:22, 12 August 2022
GOMAP
[[Category:Software]][[Category:Biology]]

2 KB (263 words) - 17:17, 15 August 2022
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
Tcllib
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.tcl.tk/software/tcllib/}}

2 KB (273 words) - 16:12, 10 June 2022
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
Hacdivsel
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (280 words) - 22:20, 10 October 2022
ImageMagick
[[Category:Software]][[Category:Imaging]] ImageMagick® is a software suite to create, edit, compose, or convert bitmap images. It can read and w

3 KB (380 words) - 18:46, 15 August 2022
GenomicConsensus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (256 words) - 15:05, 10 June 2022
GDB
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}

4 KB (494 words) - 16:13, 9 January 2023
Ugtm
[[Category:Software]][[Category:Statistics]][[Category:Modeling]]

2 KB (247 words) - 16:58, 6 June 2022
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
SeSiMCMC
[[Category:Software]][[Category:Sequencing]]

3 KB (299 words) - 22:41, 21 August 2022
Langdetect
[[Category:Software]]

2 KB (242 words) - 17:01, 23 August 2022
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
READemption
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:58, 1 June 2022
Geant4
[[Category:Software]][[Category:Physics]]

3 KB (416 words) - 19:34, 30 November 2022
Maq
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (377 words) - 19:47, 12 August 2022
Ngs-bits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (296 words) - 16:57, 10 June 2022
Bruker2nifti
[[Category:Software]][[Category:Phylogenetics]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]

3 KB (300 words) - 15:31, 3 June 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
GenomeTools
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 18:58, 12 August 2022
TREEPUZZLE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (450 words) - 19:31, 10 June 2022
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
Topd
[[Category:Software]][[Category:Phylogenetics]] ...'''Split, Quartets & Triplets''', and '''Disagree'''. Each option of this software is also complemented with a random analysis to test the null hypothesis tha

3 KB (439 words) - 21:24, 31 August 2023
CRISPResso2
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]][[Category:Biology]] CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome ed

2 KB (282 words) - 13:25, 11 October 2022
AMBER
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

5 KB (736 words) - 20:09, 5 February 2024
Msvar
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.

2 KB (260 words) - 13:35, 19 August 2022
Edyeet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 19:43, 4 November 2020
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
Subread
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Variant Calling]]

3 KB (315 words) - 12:57, 15 August 2022
Garfield
[[Category:Software]][[Category:Genomics]]

3 KB (342 words) - 22:51, 30 November 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
PyCharm
[[Category:Software]][[Category:Programming]]

2 KB (229 words) - 12:24, 26 August 2022
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
BayeScan
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |{{#vardefine:url|http://cmpg.unibe.ch/software/BayeScan/index.html}}

3 KB (402 words) - 18:10, 12 August 2022
FastQ-Screen
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 16:05, 16 March 2020
SpeedSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 22:29, 9 December 2020
Ansible
[[Category:Software]][[Category:Workflow Automation]]

3 KB (348 words) - 14:17, 12 August 2022
Grf
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (278 words) - 17:21, 15 August 2022
Ferret
[[Category:Software]][[Category: Geospatial]][[Category:Climate]][[Category:Visualization]][[Ca |{{#vardefine:exe|}} 

3 KB (359 words) - 20:26, 24 August 2022
Csubst
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (380 words) - 22:12, 26 July 2023
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
GDC-Client
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (311 words) - 18:57, 12 August 2022
Biolite
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]]

3 KB (362 words) - 12:54, 15 August 2022
GWAMA
[[Category:Software]][[Category:Phylogenetics]] ...medcentral.com/articles/10.1186/1471-2105-11-288 Magi R, Morris AP: GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics 2010, 11:288.

3 KB (322 words) - 13:33, 26 May 2020
Bamtofastq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 13:56, 8 March 2021
Guideseq
[[Category:Software]]

2 KB (259 words) - 18:08, 15 August 2022
Plasflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (292 words) - 20:17, 31 May 2022
MGERT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 14:20, 15 September 2020
Fast-Plast
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (487 words) - 21:20, 6 December 2019
OpenBabel
[[Category:Software]][[Category:Biology]]

2 KB (283 words) - 17:51, 19 August 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
Blast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (402 words) - 18:17, 12 August 2022
Spark
[[Category:Software]][[Category:Utility]]

11 KB (1,573 words) - 22:01, 15 December 2022
ALFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 21:33, 26 August 2020
Trim isoseq polya
[[Category:Software]]

2 KB (298 words) - 15:04, 19 August 2022
GFOLD
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (388 words) - 18:54, 10 June 2022
PB-Assembly
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] pb-assembly is a collection of PacBio software including the following applications and their dependencies:

2 KB (269 words) - 20:11, 24 August 2022
SUPPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 21:24, 6 December 2019
Pandoc
[[Category:Software]][[Category:Utility]]

3 KB (300 words) - 16:31, 21 August 2022
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
Tophat
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (366 words) - 16:39, 22 August 2022
R8s
[[Category:Software]][[Category:phylogenetics]]

3 KB (456 words) - 21:24, 6 December 2019
DeepARG
[[Category:Software]][[Category:Phylogenetics]] ...software requires external data that has been removed from the web and the software has been abandoned by its author. It is not functional.

3 KB (320 words) - 21:58, 13 February 2023
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
Desmond
[[Category:Software]][[Category:Biology]]

2 KB (256 words) - 20:07, 6 April 2023
RepeatExplorer
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (278 words) - 21:44, 21 August 2022
Msfinder
[[Category:Software]][[Category:Biology]][[Category:Chemistry]] ...omputational MS/MS fragmentation and structure elucidation using MS-FINDER software. Analytical Chemistry 88, 7946-7958, 2016.]

3 KB (290 words) - 13:32, 19 August 2022
Gscripts
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 17:25, 15 August 2022
Subversion
[[Category:Software]][[Category:Revision Control]]

2 KB (277 words) - 20:07, 10 June 2022
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
FASTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (320 words) - 18:54, 12 August 2022
Primus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 21:22, 6 December 2019
IMA3
[[Category:Software]][[Category:Molecular Dynamics]]

3 KB (317 words) - 17:02, 6 June 2022
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
MixMHCpred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:34, 31 May 2022
Julia
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Statistics]]

3 KB (412 words) - 20:49, 21 October 2022
UMICollapse
[[Category:Software]]

2 KB (270 words) - 15:53, 16 November 2022
OpenCV
[[Category:Software]][[Category:Library]]

2 KB (283 words) - 21:31, 6 December 2019
FAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (298 words) - 18:54, 12 August 2022
PCIT
[[Category:Software]][[Category:Biology]]

3 KB (302 words) - 20:19, 12 August 2022
METANNOT
[[Category:Software]]

2 KB (241 words) - 19:27, 18 August 2022
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
4p
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] 4P (Parallel Processing of Polymorphism Panels) is a software for computing

2 KB (285 words) - 20:36, 11 August 2022
BSseeker2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:40, 10 June 2022
Package-GFE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This software package is for estimating allele and genotype frequencies from nucleotide r

2 KB (280 words) - 16:45, 10 June 2022
Alder
[[Category:Software]][[Category:biology]][[Category:genomics]] The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making infe

3 KB (305 words) - 12:33, 12 August 2022
TESS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]]

3 KB (296 words) - 16:26, 22 August 2022
PerM
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Mapping]] PerM is a software package which was designed to perform highly efficient genome scale alignme

3 KB (396 words) - 17:40, 21 August 2022
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
FLAIR
[[Category:Software]][[Category:Genomics]]

3 KB (305 words) - 18:34, 12 July 2023
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Platypus
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (435 words) - 19:21, 10 June 2022
RelocaTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 20:32, 14 January 2020
Chimera
[[Category:Software]][[Category:Biology]][[Category:Modeling]]

3 KB (296 words) - 18:27, 12 August 2022
SHRiMP
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril

2 KB (269 words) - 22:55, 21 August 2022
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
LINKS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (274 words) - 16:16, 10 June 2022
NLR-Parser
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 20:07, 21 April 2020
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
KaKs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

2 KB (281 words) - 19:18, 15 August 2022
Assembly-stats
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (293 words) - 14:56, 12 August 2022
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
RAiSD
[[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex

2 KB (292 words) - 17:38, 14 July 2020
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
PAPI
[[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} 

3 KB (360 words) - 16:36, 21 August 2022
TRANSIT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:29, 6 December 2019
Trimmomatic
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (522 words) - 20:52, 12 August 2022
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
QD
[[Category:Software]][[Category: Library]][[Category: Math]][[Category:Compiler]]

2 KB (271 words) - 17:47, 15 August 2022
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
Chipyard
[[Category:Software]][[Category:Simulation]] ...FPGA-accelerated simulation (FireSim), automated VLSI flows (Hammer), and software workload generation for bare-metal and Linux-based systems (FireMarshal). C

3 KB (360 words) - 14:30, 11 October 2022
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Hylite
[[Category:Software]]

3 KB (325 words) - 21:51, 24 February 2023
MetaCompare
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 21:21, 6 December 2019
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
Preseq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://smithlab.usc.edu/plone/software/librarycomplexity}}

3 KB (303 words) - 20:26, 12 August 2022
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
ALLPATHS-LG
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}

2 KB (299 words) - 12:36, 12 August 2022
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
FLEA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 22:01, 27 August 2020
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
AdmixTools
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes

3 KB (400 words) - 20:50, 11 August 2022
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
Bloomfiltertrie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:18, 6 December 2019
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
SIGffRid
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:17, 1 June 2022
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
Kneaddata
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 14:36, 4 September 2020
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
ReFrame
[[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]

2 KB (240 words) - 21:40, 21 August 2022
Tombo
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (247 words) - 19:28, 1 June 2022
Metaphlan
[[Category:Software]][[Category: Phylogenetics]]

2 KB (258 words) - 15:21, 26 August 2022
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
Mlstcheck
[[Category:Software]][[Category:Phylogenetics]] ...ndrew J. Page, Ben Taylor, Jacqueline A. Keane, The Journal of Open Source Software, (2016).]

3 KB (395 words) - 18:06, 27 May 2022
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
Matlab GUI Example
[[Category:Software]]

3 KB (375 words) - 21:32, 24 October 2022
NGC CLI
[[Category:Software]][[Category:shell]]

2 KB (282 words) - 16:25, 19 August 2022
DCMTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]][[Category:Neuroscience]] ...+. It comes in complete source code and is made available as "open source" software.

3 KB (304 words) - 20:31, 10 June 2022
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
Giraf
[[Category:Software]] |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/giraf/}}

3 KB (382 words) - 21:12, 7 December 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
Rascaf
[[Category:Software]][[Category:Biology]]

3 KB (415 words) - 21:30, 21 August 2022
BioBakery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 14:04, 3 February 2022
MAGeCKFlute
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 20:24, 15 August 2022
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
TensorFlow
[[Category:Software]][[Category:Library]][[Category:Math]] TensorFlow is an open-source software library that is commonly used for implementing artificial neural networks a

6 KB (790 words) - 15:25, 14 December 2022
ONT-Bonito
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 14:40, 25 February 2020
UFCG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (431 words) - 17:41, 20 September 2023
Bsmap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Biology]] BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated C

3 KB (304 words) - 18:22, 12 August 2022
SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
SICER
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software.htm}}

2 KB (279 words) - 16:35, 10 June 2022
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Run dbcan
[[Category:Software]][[Category:Biology]]

3 KB (377 words) - 16:48, 9 June 2023
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
Phyluce
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultr

4 KB (517 words) - 18:23, 21 August 2022
GAL
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 21:20, 6 December 2019
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
Porechop
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:23, 6 December 2019
AFNI
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (363 words) - 20:52, 11 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
VCF-kit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 17:26, 22 August 2022
Tcoffee
[[Category:Software]][[Category:Biology]]

2 KB (280 words) - 20:46, 12 August 2022
Guppy
[[Category:Software]][[Category:Phylogenetics]]

4 KB (506 words) - 21:07, 14 December 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
Z1Plus
[[Category:Software]]

2 KB (293 words) - 19:36, 6 September 2023
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
Pymesh
[[Category:Software]]

2 KB (271 words) - 16:09, 9 March 2023
FEniCS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:20, 6 December 2019
Stata
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|1}} 

4 KB (621 words) - 15:23, 5 January 2023
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
BppSuite
[[Category:Software]][[Category:Genomics]]

2 KB (248 words) - 15:37, 9 December 2022
ROOTPy
[[Category:Software]][[Category:Data Science]]

3 KB (389 words) - 16:49, 21 August 2022
CDNA Cupcake
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (276 words) - 13:24, 15 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Singularity
[[Category:Software]][[Category:Workflow Automation]]

3 KB (410 words) - 21:30, 6 February 2023
LAMP
[[Category:Software]][[Category:Biology]][[Category:Genomics]] LAMP is a software package for the inference of locus-specific ancestry in recently admixed po

2 KB (245 words) - 19:29, 12 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
Mlst
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:22, 6 December 2019
VASP
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

4 KB (550 words) - 19:00, 21 July 2023
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
Blast2GO
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

6 KB (920 words) - 14:08, 16 March 2023
VirusFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] VirusFinder 2 is a new software tool for characterizing intra-host viruses through next generation sequenci

3 KB (410 words) - 21:29, 6 December 2019
Gotcloud
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 22:14, 27 August 2020
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
Matlab
[[Category:Software]][[Category:Language]][[Category:Math]] |{{#vardefine:exe|1}} 

9 KB (1,361 words) - 16:06, 28 November 2023
Fastq-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (306 words) - 17:31, 10 June 2022
Category:Assembly
[[Category:Biology]][[Category:NGS]][[Category:Software]] Short Sequence Assembly software.

20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
STAR-CCM+
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 16:01, 22 August 2022
MITE-Hunter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (250 words) - 15:05, 10 June 2022
NCBI GenBank Tools
[[Category:Software]][[Category:Biology]][[Category:Healthcare]]

2 KB (291 words) - 14:33, 19 August 2022
KLayout
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:33, 15 August 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
PyHIST
[[Category:Software]]

4 KB (567 words) - 16:12, 22 December 2022
InParanoid
[[Category:Software]][[Category:Biology]]

2 KB (236 words) - 19:20, 12 August 2022
Spidey
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (295 words) - 20:44, 12 August 2022
DiscoVista
[[Category:Software]][[Category:Phylogenetics]] DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic discordance. The package is written by

3 KB (291 words) - 19:00, 28 January 2020
CLHEP
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 14:10, 13 June 2022
SOAPdenovo-Trans
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (283 words) - 00:05, 22 August 2022
NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
MGEfinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:55, 14 September 2020
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
MHAP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (270 words) - 16:15, 10 June 2022
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
Micop
[[Category:Software]][[Category:Genomics]]

2 KB (269 words) - 16:40, 27 September 2022
SNPTEST
[[Category:Software]][[Category:Phylogenetics]] ...is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the

3 KB (302 words) - 16:17, 2 January 2020
Coevol
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (399 words) - 18:37, 12 August 2022
Resistify
[[Category:Software]]

2 KB (264 words) - 16:44, 6 February 2024
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
Lima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (299 words) - 19:57, 15 August 2022
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
WDSSII
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (299 words) - 20:05, 24 August 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
Hmmer2go
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (280 words) - 18:18, 15 August 2022
PyCogent
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (275 words) - 17:20, 1 June 2022
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
SCRIPTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://software.broadinstitute.org/software/scripture/}}

3 KB (302 words) - 20:36, 12 August 2022
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Wgd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 19:52, 27 May 2022
CNV-Sim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 17:28, 10 June 2022
PennCNV
[[Category:Software]][[Category:Phylogenetics]] PennCNV is a free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays.

4 KB (474 words) - 21:23, 6 December 2019
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
Redundans
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
RNAFramework
[[Category:Software]]

2 KB (238 words) - 21:57, 21 August 2022
Category:Image Processing
[[Category:Software]]

14 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Jabba
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:21, 6 December 2019
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
Whiteboxtools
[[Category:Software]][[Category:Phylogenetics]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

3 KB (408 words) - 17:43, 22 August 2022
Slow5tools
[[Category:Software]]

2 KB (259 words) - 17:49, 21 July 2022
MTG2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
GenePainter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 21:20, 6 December 2019
HOMER
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (330 words) - 18:19, 15 August 2022
CellRanger-ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] ...ardefine:url|https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/overview/welcome}}

3 KB (288 words) - 18:24, 12 August 2022
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
SNAP
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (372 words) - 20:42, 12 August 2022
BDG-SeQuila
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 21:41, 26 August 2020
ProtHint
[[Category:Software]]

3 KB (329 words) - 20:27, 12 August 2022
HDF4
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:exe|}} 

2 KB (314 words) - 18:16, 15 August 2022
Unicycler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:29, 6 December 2019
BWA-PSSM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 21:12, 6 December 2019
Ngmlr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 16:24, 10 June 2022
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
ABySS
[[Category:Software]][[Category:Biology]][[Category:De Novo]] |{{#vardefine:url|http://www.bcgsc.ca/platform/bioinfo/software/abyss}}

2 KB (315 words) - 16:17, 19 August 2022
QuorUM
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 21:24, 6 December 2019
FDSTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 21:34, 27 August 2020
BMGE
[[Category:Software]] ...teur.fr/en/publication/bmge-block-mapping-and-gathering-with-entropy-a-new-software-for-selection-of-phylogenetic-informative-regions-from-multiple-sequence-al

3 KB (407 words) - 13:04, 15 August 2022
Opennmt-py
[[Category:Software]][[Category:Language]][[Category:Machine_Learning]]

2 KB (272 words) - 20:14, 6 April 2023
ClustalO
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (292 words) - 18:36, 12 August 2022
Falco
[[Category:Software]] Falco is a program emulation of the popular FastQC software to check large sequencing reads for common problems.

2 KB (283 words) - 14:11, 21 October 2022
MAGeCK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:21, 6 December 2019
Category:Python
[[Category:Software]]

3 members (0 subcategories, 0 files) - 21:56, 1 February 2014
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
PASA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (687 words) - 21:04, 4 January 2023
Ea-utils
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

4 KB (438 words) - 14:54, 15 August 2022
IsoSeq3
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (295 words) - 20:10, 24 August 2022
Cactus
[[Category:Software]][[Category:Genomics]]

3 KB (298 words) - 21:30, 18 March 2024
MMvec
[[Category:Software]][[Category:Chemistry]]

2 KB (238 words) - 20:51, 18 August 2022
Hyb
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (247 words) - 15:07, 10 June 2022
Ont fast5 api
[[Category:Software]][[Category:Phylogenetics]] Oxford Nanopore Technologies fast5 API software

2 KB (238 words) - 17:49, 19 August 2022
DAKOTA
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

4 KB (484 words) - 18:26, 14 December 2022
Platon
[[Category:Software]] <code>Robertson J., Nash J. H. E. (2018) MOB-suite: Software Tools for Clustering, Reconstruction and Typing of Plasmids From Draft Asse

4 KB (437 words) - 17:14, 14 December 2022
Pbtranscript-tofu
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (324 words) - 20:11, 24 August 2022
Nuke
[[Category:Software]]

2 KB (277 words) - 13:47, 19 July 2023
Haploflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (287 words) - 20:31, 3 January 2022
SplAdder
[[Category:Software]][[Category:Phylogenetics]] ...lternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized format

3 KB (304 words) - 15:50, 22 August 2022
ANDI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 14:11, 20 February 2023
PICRUSt
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 18:28, 10 June 2022
Cammiq
[[Category:Software]][[Category:Biology]][[Category:Genomics]] CAMMiQ is a software tool for microbial identification and quantification.

2 KB (281 words) - 21:39, 14 June 2023
MRIcron
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (329 words) - 20:33, 24 August 2022
SIFT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 20:40, 12 August 2022
GMP
[[Category:Software]][[Category:Library]]

3 KB (373 words) - 13:43, 3 June 2022
Badread
[[Category:Software]][[Category:Phylogenetics]] ...RR. Badread: simulation of error-prone long reads. Journal of Open Source Software. 2019;4(36):1316. doi:10.21105/joss.01316.]

3 KB (363 words) - 20:47, 24 September 2020
Bmtagger
[[Category:Software]][[Category:Genomics‏‎]][[Category:Biology]]

2 KB (251 words) - 13:05, 15 August 2022
Category:Astronomy
[[Category:Software]]

9 members (0 subcategories, 0 files) - 16:17, 3 June 2022
Mykrobe
[[Category:Software]]

2 KB (246 words) - 16:37, 21 June 2023
RStudio
[[Category:Software]][[Category:Statistics]]

3 KB (461 words) - 19:51, 18 July 2023
EggNOG-mapper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 19:29, 6 December 2021
Swarm
[[Category:Software]][[Category:Data Science]]

2 KB (296 words) - 16:49, 21 August 2022
Blast2GO CLI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (282 words) - 20:19, 24 August 2022
Amuse
[[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat

2 KB (287 words) - 20:34, 15 August 2022
Monolix
[[Category:Software]][[Category:Modeling]][[Category:Biology]]

2 KB (287 words) - 11:57, 19 August 2022
Ranger
[[Category:Software]][[Category:File Management]]

2 KB (284 words) - 13:54, 21 October 2022
Iaps
[[Category:Software]]

2 KB (250 words) - 18:42, 8 February 2023
ShapeMapper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (387 words) - 21:24, 6 December 2019
Draft:Software Installation Policies and Guidelines
==Availabile Linux Software installed in ResVault==

2 KB (262 words) - 18:47, 20 February 2023
MITObim
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 15:20, 22 April 2020
PRSice
[[Category:Software]][[Category:Phylogenetics]] PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic

2 KB (287 words) - 14:26, 1 February 2021
BEDOPS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (317 words) - 12:48, 15 August 2022
CellRanger-DNA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]][[Category:Genomic |{{#vardefine:url|https://support.10xgenomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}

2 KB (263 words) - 13:25, 15 August 2022
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
Pygot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (248 words) - 21:24, 6 December 2019
Squigglekit
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

2 KB (254 words) - 15:55, 22 August 2022
FrameDP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (249 words) - 15:07, 10 June 2022
TRNAscan-Se
[[Category:Software]][[Category:biology]][[Category:NGS]] ...nce analysis, but is applicable to other DNAs as well. It applies our COVE software (see below) with a carefully built tRNA covariance model, while getting aro

3 KB (389 words) - 20:53, 12 August 2022
AGAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (346 words) - 22:01, 15 July 2020
Arriba
[[Category:Software]][[Category:Phylogenetics]]

3 KB (363 words) - 14:07, 1 April 2021
Ruby
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (272 words) - 18:55, 21 August 2022
R-index
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:24, 6 December 2019
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
GroopM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:20, 6 December 2019
JAGS
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 17:12, 10 June 2022
Fit-sne
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:34, 27 May 2022
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
Screen
[[Category:Software]][[Category:Programming]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/screen/}}

3 KB (441 words) - 22:30, 21 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
GFam
[[Category:Software]]

3 KB (339 words) - 17:06, 15 August 2022
DeepPicker
[[Category:Software]][[Category:Imaging]] This software is installed in a container.

2 KB (281 words) - 14:34, 15 August 2022
Quickmerge
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 21:24, 6 December 2019
Blocked Accounts
* Improper password in various SFTP software clients (FileZilla, etc.)

2 KB (337 words) - 21:37, 29 January 2024
Valgrind
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (275 words) - 21:31, 6 December 2019
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
Structure
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (325 words) - 16:03, 22 August 2022
BreakDancer
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:16, 6 December 2019
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
Snakemake
[[Category:Software]][[Category:Workflow Automation]][[Category:Biology]] ...inition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

3 KB (385 words) - 18:51, 15 August 2022
Meta-Tissue
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (328 words) - 19:24, 18 August 2022
ADMIXTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|https://www.genetics.ucla.edu/software/admixture/index.html}}

3 KB (366 words) - 20:51, 11 August 2022
Category:Language
[[Category:Software]]

22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
RIGERJ
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 21:24, 6 December 2019
Wannier90
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (268 words) - 21:31, 6 December 2019
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
Loter
[[Category:Software]] Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol

2 KB (297 words) - 17:15, 20 March 2023
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
YAGO
[[Category:Software]]

4 KB (480 words) - 17:13, 15 December 2022
ViennaRNA
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (396 words) - 19:08, 10 June 2022
TrimAl
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Alignment‏]]

2 KB (264 words) - 19:32, 24 August 2022
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
Bamstats
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (251 words) - 18:01, 12 August 2022
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
Parsnp
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (297 words) - 21:22, 6 December 2019
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
CryoSPARC
[[Category:Software]] CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug d

3 KB (383 words) - 18:05, 10 May 2024
Bayenv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 19:03, 10 June 2022
JACUSA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (240 words) - 19:08, 15 August 2022
PASTA
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (381 words) - 19:31, 24 August 2022
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
Firefox
[[Category:Software]][[Category:Linux]]

3 KB (318 words) - 16:28, 19 October 2022
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
Ibdne
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (308 words) - 17:05, 27 May 2022
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Dragmap
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]][[Category:Biology]] Dragmap is the Dragen mapper/aligner Open Source Software.

2 KB (249 words) - 14:47, 15 August 2022
Satsuma2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:10, 1 June 2022
DAWGPAWS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 21:20, 6 December 2019
BESST
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 12:51, 15 August 2022
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
MinkowskiEngine
[[Category:Software]][[Category:Machine Learning]]

2 KB (256 words) - 17:52, 31 May 2022
ALLMAPS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 21:11, 6 December 2019
HybPiper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (349 words) - 18:36, 10 June 2022
MongoDB
[[Category:Software]][[Category:Database]]

3 KB (340 words) - 19:22, 11 February 2021
Nonpareil
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 15:48, 17 November 2020
Tracula
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]

3 KB (342 words) - 20:51, 12 August 2022
SURVIVOR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 21:24, 6 December 2019
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
DS9
[[Category:Software]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (322 words) - 13:07, 6 June 2022
AWSCLI
[[Category:Software]][[Category:Utility]]

2 KB (267 words) - 15:26, 12 August 2022
SNPGenie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (423 words) - 18:41, 1 June 2022
Category:Compiler
[[Category:Software]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For

24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
Knime
[[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an

3 KB (318 words) - 14:46, 9 June 2023
DSRC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 14:27, 17 February 2021
UDUNITS
[[Category:Software]][[Category:Library]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/udunits/}}

2 KB (279 words) - 17:17, 22 August 2022
Disbatch
[[Category:Software]]

2 KB (246 words) - 15:19, 18 July 2023
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
Groovy
[[Category:Software]][[Category:Programming]]

2 KB (281 words) - 21:21, 6 December 2019
Category:Imaging
[[Category:Software]]

46 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Graphaligner
[[Category:Software]][[Category:Genomics]]

2 KB (262 words) - 21:48, 12 January 2023
Nsight
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

3 KB (316 words) - 20:39, 24 August 2022
Tbb
[[Category:Software]][[Category:library]]

2 KB (259 words) - 21:29, 6 December 2019
Merqury
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 13:54, 12 August 2020
TGSGapCloser
[[Category:Software]][[Category:Phylogenetics]] A gap-closing software tool that uses error-prone long reads generated by third-generation-sequenc

3 KB (321 words) - 15:35, 20 April 2021
DVGfinder
[[Category:Software]]

3 KB (319 words) - 13:59, 31 July 2023
Lucene
[[Category:Software]][[Category:Programming]][[Category:Search]]

2 KB (262 words) - 12:11, 26 August 2022
SimSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (283 words) - 22:59, 21 August 2022
MET
[[Category:Software]]

3 KB (365 words) - 20:04, 24 August 2022
Circtools
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the circtools software

3 KB (433 words) - 19:03, 27 January 2023
Deepvariant
[[Category:Software]]

3 KB (356 words) - 13:17, 16 April 2024
RNAsalsa
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (368 words) - 21:24, 6 December 2019
CutRunTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 22:20, 26 August 2020
Nemo
[[Category:Software]][[Category:Machine Learning]]

2 KB (290 words) - 17:58, 15 August 2022
Illumina-utils
[[Category:Software]][[Category:Phylogenetics]]

2 KB (295 words) - 18:43, 15 August 2022
CPLEX
[[Category:Software]][[Category:Climate]] |{{#vardefine:url|http://www-01.ibm.com/software/commerce/optimization/cplex-optimizer/}}

2 KB (264 words) - 19:35, 24 August 2022
Sine scan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 18:28, 1 June 2022
GUAVA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 21:20, 6 December 2019
VASP make
[[Category:Software]]

2 KB (249 words) - 03:23, 17 April 2018
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
Perl
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (811 words) - 17:56, 2 January 2023
Linksbrowser
[[Category:Software]][[Category:Web]]

2 KB (257 words) - 17:50, 15 August 2022
GRACKLE
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Astronomy]]

2 KB (294 words) - 17:18, 15 August 2022
RoseTTAFold
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 21:29, 20 July 2021
FFTW
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (223 words) - 16:41, 15 August 2022
Minimac
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 20:11, 18 August 2022
Segment-liftover
[[Category:Software]]

2 KB (251 words) - 20:38, 12 August 2022
SVDetect
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (303 words) - 20:46, 12 August 2022
QRNA
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}

2 KB (251 words) - 17:39, 1 June 2022
PILON
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:phylogenetics]] Pilon is a software tool which can be used to:

3 KB (321 words) - 20:23, 12 August 2022
Macaulay2
[[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry

2 KB (246 words) - 20:23, 15 August 2022
BIDSCOIN
[[Category:Software]][[Category:Neuroscience]]

2 KB (263 words) - 15:20, 14 March 2023
Tensorboard
...separate workload within a HiPerGator Desktop session. Many neural network software frameworks are able to stream training data to a TensorBoard log file.

2 KB (231 words) - 21:03, 12 December 2023
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
Nanopolish
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:38, 10 June 2022
Mxnet
[[Category:Software]][[Category:healthcare]]

2 KB (265 words) - 22:02, 10 October 2022
Stringtie
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:NGS]][[Category:Seque |{{#vardefine:url|http://ccb.jhu.edu/software/stringtie/}}

3 KB (301 words) - 20:45, 12 August 2022
Training
===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].

3 KB (484 words) - 13:21, 10 January 2023
GeneMarkS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 16:45, 27 May 2022
SourceTracker2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 14:19, 14 September 2020
Snpflip
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (247 words) - 00:05, 22 August 2022
CMWP
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (329 words) - 17:57, 10 June 2022
Ont tutorial cas9
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 18:38, 2 June 2022
Circlator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 13:34, 15 August 2022
BOLT-LMM
[[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f

2 KB (289 words) - 16:24, 2 January 2020
DDT
[[Category:Software]][[Category:Utility]]

5 KB (754 words) - 19:24, 30 October 2023
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
Ksnp
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Variant Calling]] kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds

3 KB (327 words) - 12:56, 15 August 2022
Mashtree
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762]

2 KB (280 words) - 13:30, 15 August 2022
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
WhatsHap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b

2 KB (269 words) - 21:29, 6 December 2019
Magus
[[Category:Software]][[Category:Sequencing]][[Category:Alignment]]

3 KB (327 words) - 17:51, 16 March 2022

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