Ont tutorial cas9
The Evaluation of read-mapping characteristics from a Cas-mediated PCR-free enrichment tutorial demonstrates a workflow for mapping long DNA sequence reads to a reference genome, and evaluates the performance of a Cas9 based target enrichment strategy. This workflow is suitable for Oxford Nanopore fastq sequence collections and requires a reference genome and a BED file of target coordinates.
module spider ont_tutorial_cas9 to find out what environment modules are available for this application.
- HPC_ONT_TUTORIAL_CAS9_DIR - installation directory