ALLPATHS-LG

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Description

allpathslg website  

ALLPATHS-LG is a short read assembler. It has been designed to use reads produced by new sequencing technology machines such as the Illumina Genome Analyzer. This version has been optimized for, but not necessarily limited to, reads of length 100 bases. ALLPATHS is not designed to assemble Sanger or 454 FLX reads, or a mix of these with short reads.

Required Modules

modules documentation

Serial

  • allpathslg

System Variables

  • HPC_ALLPATHSLG_DIR - installation directory




Validation

  • Validated 4/5/2018