Ngmlr

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Description

ngmlr website  

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Required Modules

Serial

  • ngmlr

System Variables

  • HPC_NGMLR_DIR - installation directory
  • HPC_NGMLR_BIN - executable directory




Citation

If you publish research that uses ngmlr you have to cite it as follows:

Accurate detection of complex structural variations using single molecule sequencing