MHAP

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Description

mhap website  

MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).

Required Modules

Serial

  • mhap

System Variables

  • HPC_MHAP_DIR - installation directory