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MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
module spider mhap to find out what environment modules are available for this application.
- HPC_MHAP_DIR - installation directory