SALSA

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Description

salsa website  

A tool to scaffold long read assemblies with Hi-C

Required Modules

Serial

  • gcc/5.2.0
  • salsa

System Variables

  • HPC_SALSA_DIR - installation directory




Citation

If you publish research that uses salsa you have to cite it as follows:

Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.