A tool to scaffold long read assemblies with Hi-C
module spider salsa to find out what environment modules are available for this application.
- HPC_SALSA_DIR - installation directory
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.