Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
module spider unicycler to find out what environment modules are available for this application.
- HPC_UNICYCLER_DIR - installation directory
- HPC_UNICYCLER_BIN - executable directory