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The program is designed to work seamlessly with the output of our genotype imputation software IMPUTE [1] and the programs QCTOOL and GTOOL. This program was used in the analysis of the 7 genome-wide association studies carried out by the Wellcome Trust Case-Control Consortium (WTCCC)

Environment Modules

Run module spider snptest to find out what environment modules are available for this application.

System Variables

  • HPC_SNPTEST_DIR - installation directory
  • HPC_SNPTEST_BIN - executable directory
  • HPC_SNPTEST_DOC - documentation directory
  • HPC_SNPTEST_EXE - example directory