FAR

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Description

far website  

FAR is a software that removes adapter sequences from your sequencing reads by overlap alignment using the Needleman Wunsch algorithm (default) or a quality-based variant of the Needleman Wunsch algorithm. The Needleman Wunsch algorithm is a global exact string-matching algorithm, which offers maximal sensitivity and outperforms heuristic algorithm such as BLAST. Therefore the alignment of an adapter sequence to a read is very accurate.

Required Modules

modules documentation

Serial

  • far

System Variables

  • HPC_FAR_DIR - installation directory
  • LD_LIBRARY_PATH - run time library path




Validation

  • Validated 4/5/2018