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package-gfe website  

This software package is for estimating allele and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method.

Environment Modules

Run module spider package-gfe to find out what environment modules are available for this application.

System Variables

  • HPC_PACKAGE-GFE_DIR - installation directory


If you publish research that uses package-gfe you have to cite it as follows:

Maruki, T., and Lynch, M., (2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).