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illumina-utils website  

This is a small library and a bunch of clients to perform various operations on FASTQ files (such as demultiplexing raw Illumina files, merging partial or complete overlaps, and/or performing quality filtering). It works with paired-end FASTQ files and has been tested with Illumina runs processed with CASAVA version 1.8.0 or higher.

Environment Modules

Run module spider illumina-utils to find out what environment modules are available for this application.

System Variables

  • HPC_ILLUMINA-UTILS_DIR - installation directory
  • HPC_ILLUMINA-UTILS_BIN - executable directory


If you publish research that uses illumina-utils you have to cite it as follows: