Graphaligner

Description

graphaligner website  

Seed-and-extend program for aligning long error-prone reads to genome graphs.

Environment Modules

Run module spider graphaligner to find out what environment modules are available for this application.

System Variables

• HPC_GRAPHALIGNER_DIR - installation directory
• HPC_GRAPHALIGNER_BIN - executable directory

Citation

If you publish research that uses graphaligner you have to cite it as follows:

Rautiainen, M., Marschall, T. GraphAligner: rapid and versatile sequence-to-graph alignment. Genome Biol 21, 253 (2020). https://doi.org/10.1186/s13059-020-02157-2