BreakDancer is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation.
module spider breakdancer to find out what environment modules are available for this application.
- HPC_BREAKDANCER_DIR - installation directory
- HPC_BREAKDANCER_BIN - executable directory
- HPC_BREAKDANCER_LIB - library directory