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captus website  

Captus is a toolkit for the assembly of phylogenomic datasets (many samples and loci) from High-Throughput Sequencing (a.k.a. Next Generation Sequencing) data. Captus was initially designed specifically for the assembly of target-enriched (e.g. via hybridization of RNA or DNA probes) sequencing data, but has since been expanded to accomodate other common types of HTS data such as Genome Skimming, Hyb-Seq (Target Enrichment + Genome Skimming), RNA-seq, and Whole Genome Sequencing. The toolkit will also include a module for the design of probes for target enrichment experiments.

Environment Modules

Run module spider captus to find out what environment modules are available for this application.

System Variables

  • HPC_CAPTUS_DIR - installation directory