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BioBakery Workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. Quality control and statistical summary reports are automatically generated for most data types, which include 16S amplicons, metagenomes, and metatranscriptomes.

Environment Modules

Run module spider biobakery to find out what environment modules are available for this application.

System Variables

  • HPC_BIOBAKERY_DIR - installation directory
  • HPC_BIOBAKERY_BIN - executable directory
  • BIOBAKERY_WORKFLOWS_DATABASES - reference database