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hificnv website  

HiFiCNV is a copy number variant (CNV) caller optimized for HiFi reads. Key features include:

  • Segmentation and calling optimized for HiFi germline WGS
  • Automatic GC-bias estimation and correction
  • Generates bigwig tracks for depth and allele frequency to visualize CNV-scale events in IGV
  • CNV output in bedgraph and VCF formats
  • Efficient multi-threaded analysis

Environment Modules

Run module spider hificnv to find out what environment modules are available for this application.

System Variables

  • HPC_HIFICNV_DIR - installation directory
  • HPC_HIFICNV_BIN - executable directory