CASAVA

From UFRC
Jump to navigation Jump to search

Description

casava website  

Creates genomic builds, calls SNPs, detects indels, and counts reads from data generated from one or more sequencing runs.

Illumina's Consensus Assessment of Sequence and Variation (CASAVA) software captures summary information for resequencing and counting studies and places the data in a compact structure for visualization within GenomeStudio Software or publicly available analysis tools. CASAVA can create genomic builds, call SNPs, detects indels, and count reads from data generated from one or more runs of the Genome Analyzer across a broad range of sequencing applications.

CASAVA now supports Nextera dual indexing.

Required Modules

System Variables

  • HPC_CASAVA_DIR - installation directory
  • HPC_CASAVA_BIN - executable directory
  • HPC_CASAVA_DOC - documentation directory





Validation

  • Validated 4/5/2018