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svdetect website  

SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies

This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.

SVDetect is compatible with SOLiD and Illumina (>=1.3) reads.

The SVDetect online Manual is available.

Environment Modules

Run module spider svdetect to find out what environment modules are available for this application.

System Variables

  • HPC_SVDETECT_DIR - installation directory