Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker!
module spider bactopia to find out what environment modules are available for this application.
- HPC_BACTOPIA_DIR - installation directory
- HPC_BACTOPIA_BIN - executable directory
If you publish research that uses bactopia you have to cite it as follows:
Petit III RA, Read TD, Bactopia: a flexible pipeline for complete analysis of bacterial genomes. mSystems. 5 (2020), https://doi.org/10.1128/mSystems.00190-20.