Bactopia
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Description
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker!
Environment Modules
Run module spider bactopia to find out what environment modules are available for this application.
System Variables
- HPC_BACTOPIA_DIR - installation directory
- HPC_BACTOPIA_BIN - executable directory
Citation
If you publish research that uses bactopia you have to cite it as follows:
Petit III RA, Read TD, Bactopia: a flexible pipeline for complete analysis of bacterial genomes. mSystems. 5 (2020), https://doi.org/10.1128/mSystems.00190-20.