SOAPdenovo-Trans

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Description

soapdenovo-trans website  

SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.

Required Modules

modules documentation

Serial

  • soapdenovo-trans

System Variables

  • HPC_SOAPDENOVO-TRANS_DIR - installation directory
  • HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located





Validation

  • Validated 4/5/2018