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mitobim website  

The pipeline was originally developed for Illumina data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data from the Iontorrent, 454 and PacBio sequencing platforms.

Environment Modules

Run module spider mitobim to find out what environment modules are available for this application.

System Variables

  • HPC_MITOBIM_DIR - installation directory
  • HPC_MITOBIM_BIN - executable directory
  • HPC_MITOBIM_SCP - scripts directory
  • HPC_MITOBIM_EXE - examples directory
  • HPC_MITOBIM_DOC - documentation directory


If you publish research that uses mitobim you have to cite it as follows:

MITObim pipeline described in Hahn et al. 2013