KaKs

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Description

kaks website  

KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods for calculating Ka and Ks are also incorporated into KaKs_Calculator.

Required Modules

Serial

  • kaks

System Variables

  • HPC_KAKS_DIR - installation directory





Validation

  • Validated 4/5/2018