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loter website  

Loter can be used for haplotype phasing and local ancestry inference.

Environment Modules

Run module spider loter to find out what environment modules are available for this application.

System Variables

  • HPC_LOTER_DIR - installation directory


If you publish research that uses loter you have to cite it as follows:

Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol 35, 2318–2326. https://doi.org/10.1093/molbev/msy126

Dias Alves, T., 2017. Modélisation du déséquilibre de liaison en génomique des populations par méthodes l’optimisation. PhD manuscript. Grenoble Alpes University. http://www.theses.fr/2017GREAS052