Ultra-fast Computation of Genome Mappability (GenMap) computes the uniqueness of k-mers for each position in the genome while allowing for upto e mismatches.
module spider genmap to find out what environment modules are available for this application.
- HPC_GENMAP_DIR - installation directory
- HPC_GENMAP_BIN - executable directory
If you publish research that uses genmap you have to cite it as follows:
Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for phylogenetic use. PeerJ 10:e14525 https://doi.org/10.7717/peerj.14525