Fanc

Description

fanc website  

FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.

Environment Modules

Run module spider fanc to find out what environment modules are available for this application.

System Variables

• HPC_FANC_DIR - installation directory
• HPC_FANC_BIN - executables directory

Citation

If you publish research that uses fanc you have to cite it as follows:

Kruse, K., Hug, C.B. & Vaquerizas, J.M. 2020. FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data. Genome Biol 21, 303. https://doi.org/10.1186/s13059-020-02215-9