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bamaddrg: adds read groups to input BAM files, streams BAM output on stdout.

This is intended for use "fixing up" RG tags on the fly so that they reflect the source file from which the aligment originated from. This allows the "safe" merging of many files from many individuals into one stream, suitable for input into downstream processing systems such as freebayes (a population variant detector).

Environment Modules

Run module spider bamaddrg to find out what environment modules are available for this application.

System Variables

  • HPC_BAMADDRG_DIR - installation directory
  • HPC_BAMADDRG_BIN - executable directory