Cammiq
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Description
CAMMiQ is a software tool for microbial identification and quantification.
Environment Modules
Run module spider cammiq to find out what environment modules are available for this application.
System Variables
- HPC_CAMMIQ_DIR - installation directory
- HPC_CAMMIQ_BIN - executable directory
Citation
If you publish research that uses cammiq you have to cite it as follows:
Strain Level Microbial Detection and Quantification with Applications to Single Cell Metagenomics. Kaiyuan Zhu, Welles Robinson, Alejandro A. Schäffer, Junyan Xu, Eytan Ruppin, A. Funda Ergun, Yuzhen Ye, S. Cenk Sahinalp. doi: https://doi.org/10.1101/2020.06.12.149245