BEDOPS

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Description

bedops website  

BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

You can read more about BEDOPS and how it can be useful for your research in the Overview documentation, as well as in the original manuscript.

Required Modules

Serial

  • bedops

System Variables

  • HPC_BEDOPS_DIR - installation directory





Validation

  • Validated 4/5/2018