MGEScan

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Description

mgescan website  

MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on a web interface or on a command line. HMMER v3.1b1 and openMPI are supported for MGEScan-LTR and MGEScan-nonLTR programs so the better performance is guaranteed than previous version of MGEScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis.

Required Modules

Serial

  • mgescan

System Variables

  • HPC_MGESCAN_DIR - installation directory