Structure

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Description

structure website  

Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers

You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:

  • -m /path/to/mainparams
  • -e /path/to/extraparams
  • -s /path/to/STRATparams

Sample files are located in the$HPC_STRUCTURE_CONF directory.

Required Modules

modules documentation

Serial

  • structure

System Variables

  • HPC_STRUCTURE_DIR - installation directory
  • HPC_STRUCTURE_BIN - executable directory
  • HPC_STRUCTURE_DOC - documentation directory
  • HPC_STRUCTURE_CONF - directory with sample configuration files




Validation

  • Validated 4/5/2018