Search results

Minimap2
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
Velvet
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (523 words) - 17:06, 14 December 2022
Flappie
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:20, 6 December 2019
SOAPnuke
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:12, 6 April 2020
Meta-Marc
[[Category:Software]][[Category:Phylogenetics]] ...is not intended to be used as a final annotation or all-in-one tool; this software simply offers the user another view of complex metagenomic data. Users are

3 KB (336 words) - 14:51, 20 January 2021
Crass
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (300 words) - 14:02, 15 August 2022
Pdb2pqr
[[Category:Software]][[Category:Biology]][[Category:modeling]]

3 KB (336 words) - 17:51, 15 August 2022
SMRT-SV
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (340 words) - 00:03, 22 August 2022
NucleoATAC
[[Category:Software]][[Category:biology]]

2 KB (276 words) - 20:08, 12 August 2022
NGmerge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:22, 6 December 2019
Nipype
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] neuroimaging software and facilitates interaction between these packages

3 KB (348 words) - 20:07, 12 August 2022
PLEK
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:57, 10 June 2022
Coverm
[[Category:Software]][[Category:Biology]][[Category:Metagenomics]]

2 KB (290 words) - 18:14, 27 September 2023
RiboPicker
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (377 words) - 21:50, 21 August 2022
MIA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (347 words) - 19:52, 12 August 2022
QTLtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 20:58, 21 August 2022
Yolov5
[[Category:Software]][[Category:Machine Learning]]

2 KB (289 words) - 23:52, 31 January 2023
AutoDock
[[Category:Software]][[Category:Biology]]

2 KB (268 words) - 15:47, 10 June 2022
NANO
[[Category:Software]][[Category:Programming]]

3 KB (360 words) - 19:24, 29 November 2022
ART
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.niehs.nih.gov/research/resources/software/biostatistics/art/}}

3 KB (440 words) - 21:10, 6 December 2019
Cytoscape
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] Cytoscape is an open source software platform for visualizing molecular interaction networks and biological path

3 KB (334 words) - 14:23, 15 August 2022
XZ
[[Category:Software]][[Category:compression]][[Category:library]] XZ Utils is free general-purpose data compression software with a high compression ratio. XZ Utils were written for POSIX-like systems

2 KB (287 words) - 14:19, 27 May 2022
Gffcompare
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 16:48, 27 May 2022
FreeBayes
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (302 words) - 18:55, 12 August 2022
Nvidia CUDA Toolkit
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Graphics]][[Categor ...cs processing unit (GPU). With millions of CUDA-enabled GPUs sold to date, software developers, scientists and researchers are finding broad-ranging uses for G

4 KB (543 words) - 13:44, 20 November 2023
Concaterpillar
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 22:10, 26 August 2020
DERIVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:51, 14 May 2021
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
MountainSort
[[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent

3 KB (309 words) - 21:22, 6 December 2019
Spruceup
[[Category:Software]][[Category:Phylogenetics]] ...quence blocks (alignment columns) commonly addressed by alignment trimming software.

3 KB (317 words) - 21:24, 6 December 2019
TreePL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...h provides performance comparable with or better than that of the existing software including r8s, PATHd8 and BEAST.

3 KB (316 words) - 20:51, 12 August 2022
VDJtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:29, 6 December 2019
Clean
[[Category: software]] [[Category: biology]] [[Category: Machine Learning]]

3 KB (393 words) - 20:43, 22 February 2024
Pybedtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 13:31, 6 October 2021
Subversion
[[Category:Software]][[Category:Revision Control]]

2 KB (277 words) - 20:07, 10 June 2022
GDSL
[[Category:Software]][[Category:Library]]

3 KB (305 words) - 15:37, 6 June 2022
Duchamp
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:08, 6 June 2022
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
HALC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:20, 6 December 2019
ScGPT
[[Category:Software]]

2 KB (258 words) - 16:01, 7 August 2023
Genome STRiP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/genomestrip/}}

3 KB (446 words) - 19:28, 10 June 2022
USEARCH
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

4 KB (559 words) - 17:19, 22 August 2022
MISO
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (390 words) - 20:44, 18 August 2022
OpenCV
[[Category:Software]][[Category:Library]]

2 KB (283 words) - 21:31, 6 December 2019
Weka
[[Category:Software]][[Category:Machine Learning]][[Category:Statistics]] Weka is tried and tested open source machine learning software that can be accessed through a graphical user interface, standard terminal

3 KB (304 words) - 16:07, 6 June 2022
TEMP2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 15:09, 3 December 2021
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
Dammit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ..., the existing solutions are overly complicated or rely on crappy non-free software.

2 KB (279 words) - 21:20, 6 December 2019
Checkv
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (278 words) - 13:58, 18 October 2022
MutSig
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (262 words) - 15:08, 10 June 2022
SHARCGS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:De Novo]]

3 KB (313 words) - 22:42, 21 August 2022
MCNP
[[Category:Software]][[Category:Physics]] ...message from RSICC’s Request History tool that contains a list all of the software for which you have been licensed to the [[Remote_Support#Email|User Support

3 KB (422 words) - 21:39, 4 April 2024
TESS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]]

3 KB (296 words) - 16:26, 22 August 2022
Mriqc
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (296 words) - 20:33, 24 August 2022
Crossmapper
[[Category:Software]][[Category:phylogenetics]] ...d crossmapping when two or more organisms are sequenced as one sample. The software can be used for planning such kind of experimental setups as dual- or multi

3 KB (326 words) - 17:40, 31 January 2022
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
MiRanda
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 21:21, 6 December 2019
Alevin-fry
[[Category:Software]]

3 KB (320 words) - 18:28, 9 February 2023
Mitohifi
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]]

3 KB (312 words) - 17:01, 21 July 2022
CAVIAR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 21:17, 6 December 2019
Oases
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (293 words) - 17:25, 19 August 2022
Swarm
[[Category:Software]][[Category:Data Science]]

2 KB (296 words) - 16:49, 21 August 2022
PhyloFlash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 00:09, 29 October 2020
HapCUT2
[[Category:Software]]

3 KB (317 words) - 20:03, 8 March 2022
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
Software Development Policies
==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r

533 bytes (84 words) - 15:43, 19 August 2022
Odgi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:11, 15 July 2021
OpenBLAS
[[Category:Software]][[Category:Programming]][[Category:Library]] ...tions for specific processor types. It is developed at the Lab of Parallel Software and Computational Science, ISCAS.

2 KB (291 words) - 18:45, 2 June 2022
EnTAP
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (236 words) - 21:20, 6 December 2019
GenomicTools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:ChIP-Seq]][[Category:RNA-Se

3 KB (385 words) - 18:58, 12 August 2022
3d-dna
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (328 words) - 17:51, 10 June 2022
Syri
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (324 words) - 13:31, 15 August 2022
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
ABRicate
[[Category:Software]][[Category:Phylogenetics]] If you publish the results of Abricate please cite both the software and the appropriate database you used with --db

3 KB (314 words) - 17:27, 27 April 2020
Mikado
[[Category:Software]]

4 KB (495 words) - 19:45, 18 August 2022
FAQ
For questions about specific software such as Python, OpenOnDemand, or Custom Installations, visit [[Application ...GPU partitions, but HWGUI is more dedicated to interface visualization for software whos GUI requires hardware acceleration, but it's not directed to high perf

7 KB (1,199 words) - 02:11, 17 April 2024
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
Subphaser
[[Category:Software]]

2 KB (275 words) - 20:42, 28 April 2023
Nilearn
[[Category:Software]][[Category:Phylogenetics]]

2 KB (284 words) - 17:17, 19 August 2022
Glog
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (269 words) - 17:10, 15 August 2022
CRISP
[[Category:Software]][[Category:Phylogenetics]] CRISP is a software program to detect SNPs and short indels from pooled sequencing data. CRISP

3 KB (342 words) - 21:01, 6 December 2019
Scalpel
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (239 words) - 22:07, 21 August 2022
PRANK
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (271 words) - 20:25, 12 August 2022
BiG-SCAPE
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]][[Category:Genomics]][[Categ ...CAPE (Biosynthetic Gene Similarity Clustering and Prospecting Engine) is a software package, written in Python, that constructs sequence similarity networks of

3 KB (377 words) - 12:53, 15 August 2022
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Metabin
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

4 KB (588 words) - 19:25, 18 August 2022
HASLR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 19:53, 17 August 2020
Isonclust2
[[Category:Software]]

3 KB (303 words) - 15:23, 28 October 2022
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
Intel MPI
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]] |{{#vardefine:url|https://software.intel.com/en-us/intel-mpi-library}}

3 KB (297 words) - 12:01, 26 August 2022
Shasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (402 words) - 21:24, 6 December 2019
OrthoFinder
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.stevekellylab.com/software/orthofinder}}

2 KB (276 words) - 17:58, 19 August 2022
W2rap-contigger
[[Category:Software]][[Category:biology]][[Category:genomics]]

2 KB (246 words) - 21:29, 6 December 2019
Chewiesnake
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (457 words) - 15:02, 23 October 2023
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022
Preseq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://smithlab.usc.edu/plone/software/librarycomplexity}}

3 KB (303 words) - 20:26, 12 August 2022
ZUMIS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (302 words) - 17:55, 22 August 2022
GraphSplitting
[[Category:Software]][[Category:Phylogenetics]] gs2 is a software to conduct a brand-new phylogenetic analysis method--the Graph Splitting (G

2 KB (270 words) - 17:28, 4 June 2021
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
MIGRATE-N
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:exe|1}} 

5 KB (636 words) - 16:05, 22 December 2022
Ctk
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (297 words) - 16:53, 10 October 2022
Quantas
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (247 words) - 20:29, 12 August 2022
Category:Performance Analysis
[[Category:Software]]

10 members (0 subcategories, 0 files) - 19:52, 22 August 2022
Genesis
[[Category:Software]] ...ftware under the LGPLv3. Earlier versions (<=1.4) were distributed as free software under the GPLv2 license.

3 KB (368 words) - 17:51, 3 April 2024
Consed
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 18:39, 12 August 2022
Bloomfiltertrie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:18, 6 December 2019
HELEN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 22:22, 27 August 2020
SpaceRanger
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 18:57, 20 October 2021
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
PyPHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:24, 6 December 2019
GDrive
[[Category:Software]]

3 KB (400 words) - 20:03, 5 October 2023
ANTs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 16:02, 4 April 2022
Texlive
[[Category:Software]][[Category:Documentation]]

2 KB (267 words) - 16:34, 22 August 2022
SpliceTrap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (347 words) - 20:44, 12 August 2022
Metaphlan
[[Category:Software]][[Category: Phylogenetics]]

2 KB (258 words) - 15:21, 26 August 2022
Mathematica
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 22:21, 8 September 2020
MetaMaps
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 19:25, 14 December 2021
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
MetaPhlAn2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (319 words) - 19:28, 2 June 2022
SRA-Human-Scrubber
[[Category:Software]]

3 KB (411 words) - 14:01, 27 May 2022
Amber Job Sample Scripts
[[Category:Software]]

1 KB (171 words) - 21:18, 5 December 2022
SInC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (278 words) - 21:24, 6 December 2019
APT
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (342 words) - 20:09, 7 May 2024
DCMTK
[[Category:Software]][[Category:Biology]][[Category:Imaging]][[Category:Neuroscience]] ...+. It comes in complete source code and is made available as "open source" software.

3 KB (304 words) - 20:31, 10 June 2022
AtomMan
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 14:16, 22 September 2020
Irep
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (268 words) - 19:23, 12 August 2022
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
NucDiff
[[Category:Software]][[Category:Phylogenetics]] ...ral.com/articles/10.1186/gb-2004-5-2-r12 Kurtz S et al. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. doi 10.1186/gb-200

3 KB (315 words) - 21:22, 6 December 2019
Ancestryhmm
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (291 words) - 21:25, 9 May 2023
PhyloPhlAn2
[[Category:Software]][[Category: Phylogenetics]] ...different phylogenetic analysis) where the user can specify the preferred software to be used to perform each step of the pipeline. In addition, several param

3 KB (375 words) - 17:57, 9 June 2022
BYOBU
[[Category:Software]][[Category:Shell]]

3 KB (313 words) - 19:50, 11 July 2022
Jq
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
Blast2GO CLI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (282 words) - 20:19, 24 August 2022
Hail
[[Category:Software]]

3 KB (353 words) - 17:42, 19 October 2021
ADFRsuite
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (316 words) - 12:30, 12 August 2022
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
Distruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:20, 6 December 2019
Circexplorer3
[[Category:Software]]

2 KB (271 words) - 15:06, 18 January 2023
Shortbred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 16:12, 24 November 2020
SMC++
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

2 KB (268 words) - 23:52, 21 August 2022
Gawk
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/gawk/}}

3 KB (356 words) - 16:55, 15 August 2022
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
GLPK
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|http://www.gnu.org/software/glpk/glpk.html}}

2 KB (272 words) - 17:11, 15 August 2022
OpenCL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 17:52, 19 August 2022
SpinalCordToolbox
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:43, 1 June 2022
Rnalysis
[[Category:Software]] RNAlysis is a Python-based software for analyzing RNA sequencing data. RNAlysis allows you to build customized

5 KB (648 words) - 16:12, 25 April 2023
Jbrowse2
[[Category:Software]][[Category:Web]]

2 KB (246 words) - 17:50, 15 August 2022
CAP3
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (302 words) - 13:19, 15 August 2022
PhyloBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:20, 12 August 2022
DSuite
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (244 words) - 17:17, 2 June 2022
Pplacer
[[Category:Software]]

2 KB (282 words) - 15:45, 19 August 2022
NCBI C++ Toolkit
[[Category:Software]][[Category:Biology]][[Category:programming]][[Category:library]][[Category

3 KB (306 words) - 14:25, 19 August 2022
NOVOPlasty
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:23, 6 December 2019
SQLite
[[Category:Software]][[Category:Database]]

3 KB (339 words) - 13:32, 13 June 2022
Category:Mapping
[[Category:Software]]

8 members (0 subcategories, 0 files) - 17:22, 3 June 2022
D2go
[[Category:Software]][[Category:Machine Learning]] D2Go is a production ready software system from FacebookResearch, which supports end-to-end model training and

2 KB (251 words) - 14:23, 15 August 2022
Cutadapt
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (263 words) - 18:44, 12 August 2022
QT
[[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} 

2 KB (257 words) - 20:57, 21 August 2022
BRM
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:54, 26 August 2020
GCE
[[Category:Software]]

3 KB (311 words) - 18:57, 12 August 2022
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
LTRRetriever
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (255 words) - 21:21, 6 December 2019
Saige
[[Category:Software]][[Category:Genomics]]

3 KB (297 words) - 19:29, 20 January 2023
AStalavista
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (284 words) - 14:56, 12 August 2022
Cogent
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:06, 6 December 2019
Slivar
[[Category:Software]][[Category:Biology]]

2 KB (295 words) - 19:28, 10 December 2023
UCSC
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (349 words) - 20:53, 12 August 2022
VASP
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

4 KB (550 words) - 19:00, 21 July 2023
Epiteome
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 15:06, 15 August 2022
HiC-Pro
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Genomics]]

3 KB (432 words) - 18:17, 15 August 2022
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
Albacore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (258 words) - 21:10, 6 December 2019
Laneta
[[Category:Software]]

2 KB (253 words) - 19:29, 12 August 2022
Megraft
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://microbiology.se/software/megraft/}}

3 KB (293 words) - 18:35, 18 August 2022
Numba
[[Category:Software]][[Category:Compiler]]

3 KB (353 words) - 20:44, 15 August 2022
Generative AI
This page describes the collection of Generative AI software on HiperGator. Generative AI is a subset of artificial intelligence that fo *'''OpenCV''': An open-source computer vision and machine learning software library containing more than 2,500 optimized algorithms for real-time compu

7 KB (922 words) - 16:56, 14 May 2024
Proteinortho
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}

2 KB (302 words) - 20:27, 12 August 2022
STAR-CCM+
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 16:01, 22 August 2022
BEAST2-XML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 14:20, 2 September 2020
Graphtyper
[[Category:Software]][[Category:Phylogenetics]]

3 KB (373 words) - 15:43, 17 November 2021
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
Vray
[[Category:Software]] |{{#vardefine:url|https://www.chaos.com/3d-rendering-software}}

3 KB (341 words) - 16:46, 6 April 2023
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
OCaml
[[Category:Software]][[Category:Language]][[Category:Programming]]

2 KB (240 words) - 17:27, 19 August 2022
Gcnenv
[[Category:Software]][[Category:Math]]

2 KB (243 words) - 19:38, 20 June 2023
S.A.G.E
[[Category:Software]][[Category:Phylogenetics]] is a free software package containing programs for use in the genetic analysis of family, pedi

2 KB (277 words) - 15:17, 10 September 2021
CLHEP
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 14:10, 13 June 2022
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
PhyloTF2
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Alignment]]

3 KB (320 words) - 18:22, 21 August 2022
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
ARKS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:15, 6 December 2019
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
Xesmf
[[Category:Software]][[Category:Math]][[Category:Climate]]

2 KB (248 words) - 20:05, 24 August 2022
Unrar
[[Category:Software]][[Category:utility]]

2 KB (239 words) - 19:16, 3 June 2022
TetGen
[[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}

2 KB (253 words) - 16:28, 22 August 2022
Coevol
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (399 words) - 18:37, 12 August 2022
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
Bakta
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (308 words) - 15:28, 12 August 2022
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
GROCSVs
[[Category:Software]][[Category:Phylogenetics]] Genome-wide Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequen

2 KB (274 words) - 21:21, 6 December 2019
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
CellRanger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell/software/pipelines/latest/what-is-cell-ranger}}

2 KB (294 words) - 18:24, 12 August 2022
ProbABEL
[[Category:Software]][[Category:Genomics]][[Category:Biology]] ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quanti

3 KB (371 words) - 19:35, 21 August 2022
RADICAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}

2 KB (295 words) - 21:28, 21 August 2022
Clann
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] It is also important for the user to know that the software is designed to

3 KB (438 words) - 18:30, 12 August 2022
Kmerdb
[[Category:Software]][[Category:genomics]][[Category:Biology]]

2 KB (277 words) - 13:30, 15 August 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
Evigene
[[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl

3 KB (372 words) - 21:21, 6 December 2019
Open OnDemand
[[Category:Software]][[Category:GUI]]

7 KB (1,059 words) - 16:46, 5 May 2023
Scallop
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 14:44, 26 January 2021
ArrayFire
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 14:52, 12 August 2022
PDA
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/pda/}}

3 KB (294 words) - 21:23, 6 December 2019
CWLtool
[[Category:Software]][[Category:Workflow Automation]][[Category:Scheduler Apps]]

3 KB (326 words) - 18:29, 11 November 2022
Modulus
[[Category:Software]]

3 KB (338 words) - 17:43, 29 August 2022
AI Help
== AI Software == A comprehensive software stack for AI research is available on HiPerGator for both CPU and GPU accel

6 KB (870 words) - 17:17, 22 April 2024
NONMEM
[[Category:Software]][[Category:Modeling]]

3 KB (439 words) - 21:23, 6 December 2019
CIRI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 21:11, 6 December 2019
P4vasp
[[Category:Software]][[Category:Visualization]]

2 KB (230 words) - 18:01, 19 August 2022
GenGen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The

3 KB (326 words) - 17:36, 10 June 2022
Managing GDrive Access
{{ note|"project-367116221053" is the name that the developer of the "gdrive" software () provided to Google when registering the application for review and accep

3 KB (444 words) - 14:06, 16 March 2023
SOAPdenovo
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (314 words) - 00:05, 22 August 2022
GSNP
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://jil.genomics.org.cn/index.php/en/software/gsnp.html}}

3 KB (459 words) - 17:27, 15 August 2022
CodonPhyML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 13:25, 23 July 2020
Jupyter Notebooks
[[Category:Software]][[Category:Python]][[Category:Machine Learning]] __NOTOC__

18 KB (2,983 words) - 18:58, 23 March 2023
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
MicrobeAnnotator
[[Category:Software]][[Category:Annotation]][[Category:Biology]]

2 KB (270 words) - 19:02, 10 October 2022
VirtualCell
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:29, 6 December 2019
GeneSeqer
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (257 words) - 18:58, 12 August 2022
Xterm
[[Category:Software]][[Category:Shell]]

2 KB (278 words) - 19:37, 11 July 2022
Ggsashimi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 16:38, 27 May 2022
Category:Genomics
[[Category:Biology]][[Category:Software]] Genomics Software

347 members (0 subcategories, 0 files) - 15:26, 23 August 2022
Pandoc
[[Category:Software]][[Category:Utility]]

3 KB (300 words) - 16:31, 21 August 2022
CONN
[[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne

3 KB (293 words) - 20:32, 24 August 2022
Srst2
[[Category:Software]]

2 KB (278 words) - 17:42, 13 December 2022
TEToolkit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (259 words) - 20:46, 12 August 2022
MEGA
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software suite for analyzing DNA and protein sequence data from species and populati

3 KB (337 words) - 20:30, 15 December 2020
SoX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
GTAHunter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 16:39, 27 May 2022
MiXCR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire seq

3 KB (340 words) - 21:22, 6 December 2019
Quarto
[[Category:Software]]

3 KB (327 words) - 14:09, 27 February 2024
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
Category:Python
[[Category:Software]]

3 members (0 subcategories, 0 files) - 21:56, 1 February 2014
Genome Graph Annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 22:08, 27 August 2020
MAGeCK-VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (251 words) - 20:21, 26 May 2022
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
CLIFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:11, 6 December 2019
Miniprot
[[Category:Software]]

2 KB (246 words) - 19:48, 31 August 2023
Trinotate
[[Category:Software]][[Category:Biology]] Additional software included in this module:

3 KB (344 words) - 20:29, 7 December 2023
Uproc
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (418 words) - 20:53, 12 August 2022
ClustalW
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (265 words) - 18:37, 12 August 2022
DAKOTA
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

4 KB (484 words) - 18:26, 14 December 2022
Vscode
[[Category:Software]][[Category:Programming]]

3 KB (405 words) - 14:15, 26 February 2024
LazyPredict
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 14:02, 6 December 2021
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
Filtlong
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (299 words) - 21:20, 6 December 2019
OpenMM
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (315 words) - 15:30, 19 August 2022
AEGeAn
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (287 words) - 16:31, 10 June 2022
Seq crumbs
[[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category ...th Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

3 KB (328 words) - 15:12, 27 May 2022
HaMStR
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (420 words) - 20:09, 12 August 2022
MRIcron
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (329 words) - 20:33, 24 August 2022
Msprime
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 22:49, 8 September 2020
QTL-seq
[[Category:Software]]

3 KB (410 words) - 19:05, 31 January 2022
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
Starseqr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 17:12, 31 May 2022
Nf-core
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (332 words) - 18:51, 15 August 2022
WOMBAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 21:29, 6 December 2019
Breakseq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:15, 6 December 2019
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
IGTP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Oliver Eulenstein, "iGTP: A software package for large-scale gene tree

3 KB (318 words) - 19:06, 12 August 2022
Sabre
[[Category:Software]][[Category:Phylogenetics]]

3 KB (356 words) - 16:32, 2 November 2020
ExpansionHunterDenovo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (266 words) - 20:35, 8 March 2022
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
GTDBTk
[[Category:Software]][[Category:Phylogenetics]] GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and

3 KB (299 words) - 15:08, 12 April 2022
ITSx
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}

2 KB (275 words) - 19:52, 10 February 2020
ORCA
[[Category:Software]][[Category:Chemistry]][[Category:Structure]]

3 KB (399 words) - 14:03, 2 April 2024
ESOM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (242 words) - 15:08, 15 August 2022
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
OpenPose
[[Category:Software]][[Category:Programming]][[Category:Library]]

4 KB (497 words) - 18:44, 30 January 2023
Staphb-toolkit
[[Category:Software]][[Category:Biology]]

2 KB (248 words) - 19:54, 2 June 2022
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
Pod5
[[Category:Software]]

2 KB (292 words) - 17:31, 1 July 2022
Modules Basic Usage
...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...spective branches. E.g., if you need to load the module for the "espresso" software that was built with MVAPICH2 support using Intel Compiler version 11.1 you

5 KB (745 words) - 16:07, 13 February 2023
IGoR
[[Category:Software]][[Category:Phylogenetics]] IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing dat

2 KB (271 words) - 13:52, 14 May 2020
MAGMA-GWAS
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ctg.cncr.nl/software/magma}}

2 KB (273 words) - 19:35, 23 February 2021
Ghostscript
[[Category:Software]][[Category:Documentation]]

2 KB (254 words) - 17:08, 15 August 2022
Survival Kit
[[Category:Software]][[Category:Healthcare]] The Survival Kit is primarily intended to fill a gap in the software available to animal breeders who generally tend to use extremely large data

2 KB (263 words) - 16:11, 22 August 2022
GraphMap2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 19:06, 21 July 2022
Regtools
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]][[Category:Genomics]]

2 KB (254 words) - 21:41, 21 August 2022
BoxCLI
[[Category:Software]][[Category:File Management]][[Category:Web]][[Category:Programming]]

2 KB (253 words) - 13:52, 21 October 2022
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
QD
[[Category:Software]][[Category: Library]][[Category: Math]][[Category:Compiler]]

2 KB (271 words) - 17:47, 15 August 2022
Kover
[[Category:Software]][[Category:Phylogenetics]]

3 KB (336 words) - 15:43, 18 August 2020
Roguenarok
[[Category:Software]]

2 KB (226 words) - 16:07, 18 April 2023
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
IPOPT
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.

2 KB (263 words) - 17:46, 15 August 2022
MarginPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:22, 6 December 2019
Freesasa
[[Category:Software]][[Category:biology]][[Category:Molecular Dynamics]]

2 KB (276 words) - 16:49, 15 August 2022
Trgt
[[Category:Software]]

2 KB (273 words) - 14:45, 28 July 2023
Meson
[[Category:Software]][[Category:Programming]]

2 KB (237 words) - 15:56, 24 October 2023
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
Valgrind
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (275 words) - 21:31, 6 December 2019
Xpclr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:25, 26 August 2020
AAFTF
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]

2 KB (245 words) - 20:45, 11 August 2022
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
MetaGeneMark
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (298 words) - 21:22, 6 December 2019
MSTmap
[[Category:Software]][[Category:Phylogenetics]] MSTmap is a software tool that is capable of constructing genetic linkage maps efficiently and a

3 KB (354 words) - 13:45, 25 March 2020
POV-Ray
[[Category:Software]] ...uter graphics. POV-Ray is Free Software (as per the definition of the Free Software Foundation) as its source code is licensed under the Affero General Public

2 KB (269 words) - 19:17, 27 May 2022
Category:Material Science
[[Category:Software]]

5 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Plasme
[[Category:Software]]

3 KB (375 words) - 18:08, 3 April 2024
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
Wannier90
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

2 KB (268 words) - 21:31, 6 December 2019
Hifiasm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 22:23, 27 August 2020
PICSL
[[Category:Software]] This package contains a software implementation for joint label fusion and

3 KB (390 words) - 20:31, 24 August 2022
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
TreeBreaker
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (271 words) - 21:29, 6 December 2019
Dram
[[Category:Software]]

3 KB (361 words) - 14:11, 21 October 2022
CNVkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:50, 15 August 2022
Test
[[Category:Software]][[Category:shell]]

2 KB (229 words) - 21:29, 6 December 2019
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
Bamstats
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (251 words) - 18:01, 12 August 2022
Mccortex
[[Category:Software]][[Category:Phylogenetics]]

3 KB (297 words) - 22:22, 8 September 2020
FIGARO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 16:27, 15 December 2021
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
PhyloParser
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 18:17, 21 August 2022
Discvrseq
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (310 words) - 20:10, 11 April 2022
Deepsig
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 04:24, 6 December 2022
LncScore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:21, 6 December 2019
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
Firefox
[[Category:Software]][[Category:Linux]]

3 KB (318 words) - 16:28, 19 October 2022
Deepbgc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 20:11, 29 September 2020
SNPsplit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (282 words) - 20:38, 27 May 2022
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
CRISPRCasFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 21:11, 6 December 2019
SWSC-EN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 14:46, 8 January 2020
BinSanity
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (288 words) - 16:54, 10 June 2022
Bzip2
[[Category:Software]][[Category:Utility]][[Category:Library]]

2 KB (289 words) - 13:16, 15 August 2022
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
EMMAX
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]]

3 KB (304 words) - 15:06, 15 August 2022
Finemap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 14:48, 10 November 2020
DeepMReye
[[Category:Software]][[Category:biology]][[Category:Library]]

3 KB (316 words) - 18:49, 12 August 2022
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
LoFreq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
MethylDackel
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 17:55, 6 March 2020
NextPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:55, 30 November 2020
IGV
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://software.broadinstitute.org/software/igv/}}

2 KB (276 words) - 18:42, 15 August 2022
Pascal
[[Category:Software]][[Category:Compiler]][[Category:Programming]]

3 KB (303 words) - 20:44, 15 August 2022
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
Automlsa2
[[Category:Software]]

2 KB (266 words) - 15:25, 12 August 2022
Langdetect
[[Category:Software]]

2 KB (242 words) - 17:01, 23 August 2022
PCRE
[[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.

3 KB (307 words) - 12:10, 26 August 2022
Pomoxis
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (285 words) - 18:48, 21 August 2022
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Diamond
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:url| http://ab.inf.uni-tuebingen.de/software/diamond/}}

3 KB (307 words) - 14:41, 15 August 2022
PyVCF
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (236 words) - 20:08, 21 August 2022
Pbipa
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBi

2 KB (268 words) - 21:58, 27 April 2022
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
DTI-TK
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

3 KB (311 words) - 18:51, 12 August 2022
RFMIX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 14:01, 11 June 2020
Category:Data
[[Category:Software]]

12 members (5 subcategories, 0 files) - 20:50, 2 June 2022
NCBI BLAST+
[[Category:Software]][[Category:biology]]

3 KB (344 words) - 19:55, 12 August 2022
GEMMA
[[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode

2 KB (279 words) - 21:21, 6 December 2019
Category:Database
[[Category:Software]]

5 members (0 subcategories, 0 files) - 15:33, 6 February 2015
Category:Math
[[Category:Software]]

64 members (1 subcategory, 0 files) - 21:45, 24 October 2022
Deepmicrobes
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Machine Learning]]

2 KB (240 words) - 14:33, 15 August 2022
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
Stata
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|1}} 

4 KB (621 words) - 15:23, 5 January 2023
CANVAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:23, 26 August 2020
V-pipe
[[Category:Software]]

3 KB (296 words) - 17:20, 22 August 2022
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
MPB
[[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele

3 KB (344 words) - 21:21, 6 December 2019
Gephi
[[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.

3 KB (337 words) - 17:42, 11 January 2023
Bcl2fastq
[[Category:Software]][[Category:Biology]][[Category:NGS]] bcl2fastq conversion software can be used to both demultiplex data and

3 KB (328 words) - 18:12, 12 August 2022
VMD
[[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.

3 KB (384 words) - 17:33, 22 August 2022
Jasper
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (354 words) - 16:42, 14 December 2023
CHARMM
[[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 13:51, 6 June 2022
VASP make
[[Category:Software]]

2 KB (249 words) - 03:23, 17 April 2018
Fast-gep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 15:46, 22 July 2022
The silver searcher
[[Category:Software]][[Category:Search]]

2 KB (248 words) - 14:33, 29 June 2021
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
IAnnotateSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge

3 KB (330 words) - 21:21, 6 December 2019
Mapdamage
[[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]

3 KB (299 words) - 21:28, 16 September 2022
SNAPE-pooled
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (270 words) - 12:56, 15 August 2022
Bioawk
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 12:54, 15 August 2022
Simulation and Modeling
[[Category:Software]][[Category:Machine Learning]][[Category:GPU]]

1 KB (142 words) - 20:34, 9 May 2024
SEQuel
[[Category:Software]][[Category:NGS]][[Category:Biology]]

3 KB (382 words) - 22:39, 21 August 2022
SVDetect
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (303 words) - 20:46, 12 August 2022
NpScarf
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:29, 4 September 2020
Panseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:12, 17 November 2021
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
Category:Data Science
[[Category:Software]][[Category:Data]]

41 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Category:Machine Learning
[[Category:Software]]

43 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
SomaticSeq
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 00:06, 22 August 2022
Stringtie
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:NGS]][[Category:Seque |{{#vardefine:url|http://ccb.jhu.edu/software/stringtie/}}

3 KB (301 words) - 20:45, 12 August 2022
Miniasm
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (306 words) - 20:10, 18 August 2022
Inspector
[[Category:Software]][[Category:biology]][[Category:Genomics]]

3 KB (319 words) - 18:50, 15 August 2022
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
PyEXR
[[Category:Software]][[Category:Programming]]

2 KB (245 words) - 12:25, 26 August 2022
LillyMol
[[Category:Software]]

2 KB (236 words) - 14:39, 27 January 2023
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
Tbprofiler
[[Category:Software]]

3 KB (312 words) - 21:31, 10 February 2023
DDT
[[Category:Software]][[Category:Utility]]

5 KB (754 words) - 19:24, 30 October 2023
LEfSe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:14, 29 September 2020
Pytorch
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (257 words) - 15:56, 6 June 2022
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
Pm4py
[[Category:Software]][[Category:Machine Learning]][[Category:Data Mining]]

3 KB (336 words) - 22:06, 5 June 2023
Randfold
[[Category:Software]][[Category:Biology]]

2 KB (262 words) - 21:29, 21 August 2022
DISCOVAR de novo
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}

3 KB (326 words) - 14:41, 15 August 2022
Pbmm2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 20:08, 31 May 2022
QDD
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

4 KB (485 words) - 20:08, 21 August 2022
Allhic
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (299 words) - 12:35, 12 August 2022
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
GPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:14, 15 August 2022
Viralmsa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 19:56, 27 May 2022
Mvftools
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 13:58, 30 April 2020
Svim
[[Category:Software]][[Category:Biology]]

3 KB (358 words) - 17:14, 31 May 2022
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
CIRCexplorer2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 21:03, 6 December 2019
Asap
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

3 KB (295 words) - 17:29, 9 June 2022
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
Nanostripper
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (250 words) - 21:15, 13 May 2022
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
OpenBabel
[[Category:Software]][[Category:Biology]]

2 KB (283 words) - 17:51, 19 August 2022
Imoka
iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)

3 KB (346 words) - 17:07, 27 May 2022
Imaginaire
[[Category:Software]]

3 KB (302 words) - 17:55, 15 August 2022
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
Talesf
[[Category:Software]][[Category:Phylogenetics]]

2 KB (256 words) - 21:29, 6 December 2019
Gblocks
[[Category:Software]][[Category:Biology]]

3 KB (441 words) - 13:56, 13 June 2022
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
Stable-diffusion
[[Category:Software]][[Category:Machine Learning]]

2 KB (245 words) - 17:04, 31 January 2023
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
Ngmlr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 16:24, 10 June 2022
Connectomemapper3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:55, 15 August 2022
Delineate
[[Category:Software]]

3 KB (303 words) - 20:46, 18 May 2021
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
MOSAIK
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} 

3 KB (414 words) - 11:59, 19 August 2022
ForeSeqs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 21:21, 6 December 2019
BRATNextGen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BRAT-NextGen/}}

2 KB (268 words) - 13:10, 15 August 2022
Mmaction2
[[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]

2 KB (277 words) - 19:16, 6 June 2023
Scikit-learn
[[Category:Software]][[Category:Data_Science]]

2 KB (272 words) - 21:23, 6 March 2024
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
SeqyClean
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (312 words) - 22:41, 21 August 2022
GenomicNeuralnet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:09, 27 August 2020
MuSE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (333 words) - 13:23, 19 July 2021
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
Gurobi
[[Category:Software]][[Category:Math]][[Category:Programming]]

2 KB (269 words) - 12:22, 26 August 2022
Category:Shell
[[Category:CLI]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:29, 23 August 2022
PHYLIP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:42, 10 June 2022
OrthoFiller
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 20:02, 31 May 2022
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
EQTLA
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (269 words) - 18:52, 12 August 2022
Vg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (299 words) - 14:42, 4 September 2020
SE-MEI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 22:30, 21 August 2022
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
Mlcoalsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...rl|https://bioinformatics.cragenomica.es/numgenomics/people/sebas/software/software.html}}

3 KB (324 words) - 21:22, 6 December 2019
Taiyaki
[[Category:Software]][[Category:Phylogenetics]] Taiyaki is research software for training models for basecalling Oxford Nanopore reads.

2 KB (240 words) - 18:58, 1 June 2022
PHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (232 words) - 18:13, 21 August 2022
Asset
[[Category:Software]]

2 KB (253 words) - 20:07, 15 June 2023
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
Hapsembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (332 words) - 18:15, 15 August 2022
Musket
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (351 words) - 13:44, 19 August 2022
Portcullis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 19:18, 31 January 2022
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
CNSpipeline
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:19, 6 December 2019
Nullarbor
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 19:38, 31 May 2022
QMCPACK
[[Category:Software]][[Category:Library]]

2 KB (259 words) - 21:24, 6 December 2019
Pindel
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:23, 6 December 2019
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
TASSEL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]] ...a group focused on maize genetics and genomics, and for these reasons that software has design and computational optimizations that account for the biology fou

3 KB (386 words) - 16:13, 22 August 2022
TreeTime
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 17:44, 2 November 2020
ExpansionHunter
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:36, 8 March 2022
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
DeTiN
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (249 words) - 14:39, 15 August 2022
Assexon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 20:17, 10 February 2020
PLUMED
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (290 words) - 15:30, 19 August 2022
Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
XCrySDen
[[Category:Software]][[Category:Material Science]]

2 KB (282 words) - 17:47, 22 August 2022
Momi
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (305 words) - 19:03, 4 April 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
HapCompass
[[Category:Software]][[Category:Genomics]][[Category:NGS]]

2 KB (287 words) - 18:13, 15 August 2022
Release
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (272 words) - 14:24, 11 October 2022
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
NanoCount
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 20:28, 14 May 2020
KofamScan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 13:48, 26 February 2021
Ngs-bits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (296 words) - 16:57, 10 June 2022
FGMP
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 21:20, 6 December 2019
SIPeS
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

3 KB (327 words) - 20:41, 12 August 2022
TREEPUZZLE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (450 words) - 19:31, 10 June 2022
BrainIAK
[[Category:Software]][[Category:Imaging]]

3 KB (351 words) - 16:19, 27 May 2022
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
JAGS
[[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|}} 

2 KB (309 words) - 17:12, 10 June 2022
GTOOL
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}

3 KB (319 words) - 12:51, 10 September 2020
CNCI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (374 words) - 14:09, 23 April 2021
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
Msvar
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.

2 KB (260 words) - 13:35, 19 August 2022

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