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allhic website  

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

Environment Modules

Run module spider allhic to find out what environment modules are available for this application.

System Variables

  • HPC_ALLHIC_DIR - installation directory
  • HPC_ALLHIC_BIN - executable directory


If you publish research that uses allhic you have to cite it as follows:

Zhang, X. Zhang, S. Zhao, Q. Ming, R. Tang, H. Assembly of allele-aware, chromosomal scale autopolyploid genomes based on Hi-C data. Nature Plants, doi:10.1038/s41477-019-0487-8 (2019).

Zhang, J. Zhang, X. Tang, H. Zhang, Q. et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, doi:10.1038/s41588-018-0237-2 (2018).