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GTOOL can be used to create subsets of datasets using the -S option in conjunction with several sub-options. These options are illustrated in the following examples. In these examples the genotype and sample files to be subsetted are specified using the --g and --s options. The genotype and sample files should be in the format specified by the FILE FORMAT webpage.

Environment Modules

Run module spider gtool to find out what environment modules are available for this application.

System Variables

  • HPC_GTOOL_DIR - installation directory
  • HPC_GTOOL_BIN - executable directory
  • HPC_GTOOL_DOC - documentation directory
  • HPC_GTOOL_EXE - example directory