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panseq website  

Panseq determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions.

Environment Modules

Run module spider panseq to find out what environment modules are available for this application.

System Variables

  • HPC_PANSEQ_DIR - installation directory
  • HPC_PANSEQ_BIN - executable directory