DISCVR-seq Toolkit is a diverse collection of tools for working with sequencing data, developed and maintained by the Bimber Lab, built using the GATK4 engine. The set of tools is analogous to GATK or Picard.
module spider discvrseq to find out what environment modules are available for this application.
- HPC_DISCVRSEQ_DIR - installation directory
$ module load discvrseq/1.3.10
$ DISCVRseq.jar <program name> [-h]
If you publish research that uses discvrseq you have to cite it as follows:
While DISCVR-seq contains many useful tools that will not be published, a handful of the tools have their own publications:
VariantQC: a visual quality control report for variant evaluation. Yan MY, Ferguson B, Bimber BN. Bioinformatics. 2019 Dec 15;35(24):5370-5371. PMID: 31309221 IntegrationSiteMapper: Ryu et. al, Under Review