The accuracy of phylogenetic inferences often depends on choosing an appropriate model of molecular evolution. In Tagliacollo & Lanfear (submitted), we evaluated the performance of two new partitioning methods for phylogenomics studies of UCES, and conclude that automatic selection of partitions through the SWSC-EN method considerably improves model-fit and parameter estimates. This repository contains scripts to run the SWSC-EN method on your own alignments. For more information about the method, please see the accompanying paper, and the repository for replicating the analyses in that paper.
module spider swsc-en to find out what environment modules are available for this application.
- HPC_SWSC-EN_DIR - installation directory
- HPC_SWSC-EN_BIN - executable directory
- HPC_SWSC-EN_EXE - example directory