Oases

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Description

oases website  

Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. It was developed by Marcel Schulz (MPI for Molecular Genomics) and Daniel Zerbino (previously at the European Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz).

Required Modules

modules documentation

Serial

  • oases

System Variables

  • HPC_OASES_DIR - installation directory
  • HPC_OASES_BIN




Validation

  • Validated 4/5/2018