codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE).
module spider codonphyml to find out what environment modules are available for this application.
- HPC_CODONPHYML_DIR - installation directory
- HPC_CODONPHYML_BIN - executable directory
If you publish research that uses codonphyml you have to cite it as follows: