TEToolkit

Description

tetoolkit website  

TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.

Required Modules

Serial

• gcc/5.2.0
• tetoolkit

System Variables

• HPC_TETOOLKIT_DIR - installation directory
• HPC_TETOOLKIT_BIN - executable directory