TEToolkit

Description

tetoolkit website  

TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.

Environment Modules

Run module spider tetoolkit to find out what environment modules are available for this application.

System Variables

• HPC_TETOOLKIT_DIR - installation directory
• HPC_TETOOLKIT_BIN - executable directory