TEToolkit

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Description

tetoolkit website  

TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. It then performs differential analysis using DESeq.

Required Modules

Serial

  • gcc/5.2.0
  • tetoolkit

System Variables

  • HPC_TETOOLKIT_DIR - installation directory
  • HPC_TETOOLKIT_BIN - executable directory