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scallop website  

Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and paired-end reads, while also achieves both transcripts parsimony and coverage deviation minimization.

Environment Modules

Run module spider scallop to find out what environment modules are available for this application.

System Variables

  • HPC_SCALLOP_DIR - installation directory
  • HPC_SCALLOP_BIN - executable directory