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fraggenescan website  

FragGeneScan is an application for finding (fragmented) genes in short reads.

Environment Modules

Run module spider fraggenescan to find out what environment modules are available for this application.

System Variables

  • HPC_FRAGGENESCAN_DIR - installation directory
  • HPC_FRAGGENESCAN_BIN - executable directory.

Additional Information

Two convenience scripts are provided within the FragGeneScan distribution - and - in addition to the main FragGeneScan binary.

Read the usage documentation for details on how to run the program.


Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747