This repository contains a number of scripts and programs useful for finding mobile element insertion (MEI) sites from single-end datasets. In short, these programs align soft-clipped regions of alignments against repeat sequences and processes the results to find their locations.
module spider se-mei to find out what environment modules are available for this application.
- HPC_SE-MEI_DIR - installation directory
- HPC_SE-MEI_BIN - executable directory