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haslr website  

HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation Sequencing reads (such as Illumina) from the same sample. HASLR is capable of assembling large genomes on a single computing node. Our experiments show that it can assemble a CHM1 human dataset in less than 10 hours using 64 CPU threads.

Environment Modules

Run module spider haslr to find out what environment modules are available for this application.

System Variables

  • HPC_HASLR_DIR - installation directory
  • HPC_HASLR_BIN - executable directory