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mats website  

MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns.

Environment Modules

Run module spider mats to find out what environment modules are available for this application.

System Variables

  • HPC_MATS_DIR - installation directory
  • HPC_MATS_BIN - executable directory