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Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:

  • nodes, which are labeled by sequences and ids
  • edges, which connect two nodes via either of their respective ends
  • paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts) as walks through nodes connected by edges

Environment Modules

Run module spider vg to find out what environment modules are available for this application.

System Variables

  • HPC_VG_DIR - installation directory
  • HPC_VG_BIN - executable directory