Python package for calling nucleosomes using ATAC-seq data. Also includes general scripts for working with paired-end ATAC-seq data (or potentially other paired-end data).
module spider nucleoatac to find out what environment modules are available for this application.
- HPC_NUCLEOATAC_DIR - installation directory
- HPC_NUCLEOATAC_BIN - executable directory
If you publish research that uses nucleoatac you have to cite it as follows:
Schep, Alicia N., et al. "Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions." Genome research 25.11 (2015): 1757-1770.