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cogent website  

Cogent is a tool for reconstructing the coding genome using high-quality full-length transcriptome sequences. It is designed to be used on Iso-Seq data and in cases where there is no reference genome or the ref genome is highly incomplete.

Environment Modules

Run module spider cogent to find out what environment modules are available for this application.

System Variables

  • HPC_COGENT_DIR - installation directory
  • HPC_COGENT_BIN - executable directory
  • HPC_COGENT_LIB - library directory
  • HPC_COGENT_EXE - test data directory