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shortbred website  

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

Environment Modules

Run module spider shortbred to find out what environment modules are available for this application.

System Variables

  • HPC_SHORTBRED_DIR - installation directory
  • HPC_SHORTBRED_BIN - executable directory
  • HPC_SHORTBRED_SHO - shortbred executable directory