Subphaser

Description

subphaser website  

Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers

Environment Modules

Run module spider subphaser to find out what environment modules are available for this application.

System Variables

• HPC_SUBPHASER_DIR - installation directory
• HPC_SUBPHASER_BIN - executable directory

Citation

If you publish research that uses subphaser you have to cite it as follows:

Jia K, Wang Z, Wang L et. al. SubPhaser: A robust allopolyploid subgenome phasing method based on subgenome-specific k-mers [J]. New Phytologist, 2022, in press DOI:10.1111/nph.18173