Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
module spider pindel to find out what environment modules are available for this application.
- HPC_PINDEL_DIR - installation directory
- HPC_PINDEL_BIN - executable directory